1     Definition

Genomics Omics Object includes:

Genomics Omics Data representing molecular‑level biological information derived from assays such as whole‑genome sequencing, whole‑exome sequencing, targeted sequencing, RNA‑seq, proteomics, metabolomics, methylation arrays, or other high‑throughput omics technologies. The primary structure may be variant‑level data (e.g., VCF records), read‑level files (e.g., FASTQ/BAM), feature matrices (e.g., gene‑expression tables), or molecular profiles (e.g., proteomic or metabolomic abundance tables), accompanied by metadata describing sample preparation, assay technology, reference genome/build, processing pipelines, and quality metrics.

Genomics Omics Qualifier specified by MPAI‑TFA, providing information about the Sub‑Types, Formats, and Attributes of the Genomics Omics Data.

2       Functional Requirements

Genomics Omics Object shall satisfy the following requirements:

  • Genomics Omics Object Header: The Genomics Omics Object shall include a header identifying the version of the Genomics Omics Object standard.
  • Genomics Omics Object Identification: The Genomics Omics Object shall include an identifier uniquely referencing the Genomics Omics Object.
  • End User Identification: The Genomics Omics Object shall include the identifier of the End User the Genomics Omics Data refers to.
  • Time Information: The Genomics Omics Object shall include the time information associated with the Genomics Omics Data.
  • Genomics Omics Data: The Genomics Omics Object shall include Genomics Omics Data per the Genomics Omics Qualifier.
  • Genomics Omics Qualifier: The Genomics Omics Object shall include a Genomics Omics Qualifier describing the Genomics Omics Data.
  • Traceability: The Genomics Omics Object shall include provenance information and time of production.
  • Descriptive Metadata: The Genomics Omics Object shall include descriptive metadata.

3       Syntax

https://schemas.mpai.community/AIH1/V1.0/data/GenomicsOmicsObject.json

4       Semantics

Label Description
Header Genomics Omics Object Header – Standard “AIH‑GOO‑Vx.y”.
GenomicsOmicsObjectID Identifier of the Genomics Omics Object.
EndUserID ID of the End User the Genomics Omics Data refers to.
GenomicsOmicsObjectTime Time information of the Genomics Omics Data.
GenomicsOmicsData Genomics Omics Data per Qualifier.
GenomicsOmicsQualifier Genomics Omics Qualifier.
Trace Provenance information and time of production.
DescrMetadata Descriptive Metadata.